Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., protease Do (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (534), Expect = 7e-59
 Identities = 130/361 (36%), Positives = 197/361 (54%), Gaps = 29/361 (8%)

Query: 11  LGLLAAI---AIIMVTPSLRAKLMPVVEQPRNIGALQISFNEAVRKAAPAVVNI------ 61
           L LL+A    A +MV P++    +P+  + + + +L       + K  PAVV +      
Sbjct: 5   LSLLSAALLGASLMVMPAVSQAAIPLAVEGQALPSLA----PMLEKTTPAVVAVAVSGTH 60

Query: 62  -------------YNRKYSENDRRKLSIQGLGSGVIV-SEKGYIITNYHVVAQADQIVVA 107
                        +         ++   +GLGSGVI+ ++KGYI+TN HV+  AD+I++ 
Sbjct: 61  VSKQRLPDAFRYFFGPNAPREQVQERPFKGLGSGVIIDAKKGYIVTNNHVIEGADEILIG 120

Query: 108 LQDGRAAAAQLVGKDRRTDIAVLRVEGTGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTT 167
           L DGR   A+L+G D  +D+A+L++E   L  +        KVGD  +AIGNP+ LGQT 
Sbjct: 121 LHDGREIEAKLIGTDAESDVALLQIEAKNLVALKRADSDELKVGDFAVAIGNPFGLGQTV 180

Query: 168 TFGIISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLET 227
           T GI+SA GRS +  +  + FIQTDAAIN GNSGGALVN  GEL+GINTA    A     
Sbjct: 181 TSGIVSAMGRSGLGIEMLENFIQTDAAINSGNSGGALVNLNGELIGINTAIV--APGGGN 238

Query: 228 YGISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDP 287
            GI FAIP ++ + ++ ++I  G V RG +GV G+D++S  ++  G +   G  +  V P
Sbjct: 239 VGIGFAIPANMVNNLVDQLIEHGEVRRGVLGVSGRDLDSELAQGFGLDSQHGGFVNEVMP 298

Query: 288 NGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIG 347
           +  A +AG    DI++ ++ K I   Q +   +  +  G  V   L+R G+E  +   +G
Sbjct: 299 DSAADKAGIKAGDIIVSVNDKPIKSFQELRAKIGTMGAGAKVKLGLIRDGDEKTVTAVLG 358

Query: 348 E 348
           E
Sbjct: 359 E 359