Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., protease DegS (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  328 bits (841), Expect = 1e-94
 Identities = 174/346 (50%), Positives = 247/346 (71%), Gaps = 7/346 (2%)

Query: 7   RSISLGLLAAIAIIMVTPSLRAK-LMPVVEQPRNIGALQISFNEAVRKAAPAVVNIYNRK 65
           +++  GL+ A   ++VT     K L   + Q R    +++SF +AVR+AAPAVVNIY+  
Sbjct: 12  KAVLFGLIMAAMFLLVTHYFDNKSLGNSLLQNRGNNTVELSFAKAVRRAAPAVVNIYSLS 71

Query: 66  YSENDRRKL---SIQGLGSGVIVSEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKD 122
             ++  R L   S+QGLGSGVI+S++GYI+TNYHV+ +AD+IVVALQDGR   +++VG D
Sbjct: 72  IDQS--RPLNSGSLQGLGSGVIMSKEGYILTNYHVIKKADEIVVALQDGRKFTSEVVGFD 129

Query: 123 RRTDIAVLRVEGTGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISA 182
             TD++VL++EG  LP +P+N D  P+VGDVVLAIGNPYNLGQT T GIISATGR+ +S+
Sbjct: 130 PETDLSVLKIEGDNLPTVPVNLDSPPQVGDVVLAIGNPYNLGQTITQGIISATGRNGLSS 189

Query: 183 DGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKI 242
            G   F+QTDAAIN GNSGGAL++T G L+GINTA+FQ   +   +GI+FAIP  LA  I
Sbjct: 190 -GYLDFLQTDAAINAGNSGGALIDTNGSLIGINTAAFQVGGEGGGHGINFAIPIKLAHSI 248

Query: 243 MTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDIL 302
           M K+I +GRVIRG +G+ G+ IN + +++L    + G+++ G+DPNGPAARA  L +D++
Sbjct: 249 MGKLIKNGRVIRGALGISGEPINPVVAQILNLPDLRGVLVTGIDPNGPAARAQLLPRDVI 308

Query: 303 LKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGE 348
           +K DG+ + G + + D + +  PG  V  T++R+G++  LPV I E
Sbjct: 309 IKYDGEDVPGVEMLMDRIAETTPGKKVMMTVIRQGKQQELPVIIDE 354