Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., serine protease, HtrA/DegQ/DegS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  215 bits (548), Expect = 2e-60
 Identities = 132/359 (36%), Positives = 199/359 (55%), Gaps = 28/359 (7%)

Query: 14  LAAIAIIMVTPSLRAKLMPVVEQ---PRNIGALQI-SFNEAVRKAAPAVVNI-------- 61
           L+ ++  M+  +L   +MP V Q   P+++    I S    + +  PAVV++        
Sbjct: 5   LSVLSAAMLAATLT--MMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTHVS 62

Query: 62  -----------YNRKYSENDRRKLSIQGLGSGVIV-SEKGYIITNYHVVAQADQIVVALQ 109
                      +     +   ++   +GLGSGVI+ ++KGYI+TN HV+  AD I V L 
Sbjct: 63  KQRVPDVFRYFFGPNAPQEQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLH 122

Query: 110 DGRAAAAQLVGKDRRTDIAVLRVEGTGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTF 169
           DGR   A+L+G D  +DIA+L++E   L  I  +     +VGD  +AIGNP+ LGQT T 
Sbjct: 123 DGREVKAKLIGTDSESDIALLQIEAKNLVAIKTSDSDELRVGDFAVAIGNPFGLGQTVTS 182

Query: 170 GIISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYG 229
           GI+SA GRS +  +  + FIQTDAAIN GNSGGALVN +GEL+GINTA    A +    G
Sbjct: 183 GIVSALGRSGLGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIV--APNGGNVG 240

Query: 230 ISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNG 289
           I FAIP ++   ++ +I   G V RG +G+ G+D++S  ++  G +   G  +  V    
Sbjct: 241 IGFAIPANMVKNLIAQIAEHGEVRRGVLGIAGRDLDSQLAQGFGLDTQHGGFVNEVSAGS 300

Query: 290 PAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGE 348
            A +AG    DI++ +DG+ I   Q +   V  +  G  V+  L+R G++  + VT+GE
Sbjct: 301 AAEKAGIKAGDIIVSVDGRAIKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGE 359