Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., peptidase/PDZ domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  198 bits (504), Expect = 2e-55
 Identities = 129/363 (35%), Positives = 204/363 (56%), Gaps = 31/363 (8%)

Query: 13  LLAAIAIIMVTPSLRAKLMPVVEQPRNIGALQIS-------------FNEAVRKAAPAVV 59
           LL  +A+++ + +  A L    E  +N GA  ++             F + +R A     
Sbjct: 11  LLLMVAVVLSSTAQAASLPDFRELAKNAGAAVVNISTEKTVQAPENPFGDMLRNAPQGTP 70

Query: 60  NIYNRKYSENDR-----RKLSIQGLGSGVIVSEKGYIITNYHVVAQADQIVVALQD--GR 112
             ++R + + +R     R    + LGSG I+S  GYI+TN HV+A AD I V +++  G+
Sbjct: 71  --FDRFFEQFERFHGKMRPQKQRSLGSGFILSADGYIVTNNHVIADADVIHVNIENETGK 128

Query: 113 AAA--AQLVGKDRRTDIAVLRVEGTG-LPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTF 169
           +A+  A+++G D  TD+A+L+++    LPV+        +VG+ ++AIGNP+ L  + T 
Sbjct: 129 SASYDAKVIGTDEETDLALLKIDAKRQLPVLRFGDSDSLEVGEWLMAIGNPFGLDHSVTA 188

Query: 170 GIISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYG 229
           GI+SA GR  I +     F+QTDA+IN GNSGG L+N +GE++GINTA           G
Sbjct: 189 GILSAKGRD-IRSGPFDNFLQTDASINPGNSGGPLINMKGEVIGINTAIVASGQ-----G 242

Query: 230 ISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNG 289
           I FAIP ++A++I+ ++ +D +V RG+IGV  QD++  T+R LG     G ++  V P  
Sbjct: 243 IGFAIPSNMAARIIDQLKSDKKVRRGWIGVTIQDVDENTARALGLGEPRGALVGSVMPGE 302

Query: 290 PAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGED 349
           PA +AG    DILLK++G+ I     +   V  L+PG     TL R G+   + +T+GE 
Sbjct: 303 PADKAGIKAGDILLKVEGEDIADSGRLLRRVAALKPGETAKITLWRNGQTKTVNLTLGER 362

Query: 350 TRD 352
           T +
Sbjct: 363 TAE 365