Pairwise Alignments

Query, 184 a.a., ribosome maturation factor RimM from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., 16S rRNA-processing protein RimM (RefSeq) from Shewanella amazonensis SB2B

 Score =  210 bits (534), Expect = 1e-59
 Identities = 95/176 (53%), Positives = 128/176 (72%)

Query: 9   MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
           MS   + +VVGK+GS+YG++GW+K+ +YTD+ E IFDYSPW++ + GEW E KV  W+ H
Sbjct: 1   MSSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFH 60

Query: 69  NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGV 128
            K  V +L+G+  RE A +LTN EI I    +PEL EDEFYWR+L G +V+ T GY+LG 
Sbjct: 61  GKAVVAELEGVSNREQAQMLTNCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGK 120

Query: 129 VTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPAF 184
           V  ++ETGSNDVL+VKAN KDAFG+ ER+IP+L +Q +  V    ++I VDWDP F
Sbjct: 121 VDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLEVKLSEKQIIVDWDPDF 176