Pairwise Alignments

Query, 184 a.a., ribosome maturation factor RimM from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., 16S rRNA-processing protein RimM (RefSeq) from Shewanella sp. ANA-3

 Score =  207 bits (528), Expect = 6e-59
 Identities = 97/176 (55%), Positives = 128/176 (72%)

Query: 9   MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
           MS   + +V+GKLGS +GI+GWLK+ +YTD+ E IFDYSPW I + GEW E KV  W+  
Sbjct: 1   MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ 60

Query: 69  NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGV 128
            K  V +L+G+  RE A +LTN EI I P  + +L EDEFYWR+L G +V+ TNGY++GV
Sbjct: 61  GKAVVAELEGVTTRERAQMLTNCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGV 120

Query: 129 VTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPAF 184
           V  ++ETGSNDVL+VKAN KD+FG+ ER++PF+  Q I  VD Q ++I VDWDP F
Sbjct: 121 VDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKVDVQGKQILVDWDPDF 176