Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., signal recognition particle subunit FFH/SRP54 (srp54) from Pseudomonas syringae pv. syringae B728a

 Score =  633 bits (1633), Expect = 0.0
 Identities = 328/454 (72%), Positives = 380/454 (83%), Gaps = 4/454 (0%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MFENLTDRLS+TL++++GK +L EDNIKDTLREVRMALLEADVALPVV+DFVN VKE AV
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAV 60

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G EVS+SLTPGQ F+KIV+ +LE++MG +NE L L   PPAVILMAGLQGAGKTT+ GKL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGKL 120

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
           ++ LKER KK V+VVS DVYRPAAIKQLETLAND+GV FF S   QKP+DIA AAI  A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEAR 180

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
            KF DV+IVDTAGRL +D +MM EIQALH A+ P ETLFVVDAMTGQDAA+TAKAFGDAL
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKPAETLFVVDAMTGQDAANTAKAFGDAL 240

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGVILTKVDGDARGGAALSVR ITGKPIKFIG+GEK++ALEPFHPDRIASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRILGMGDV 300

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360
           LSLIE  ++ +D++KA+KLAKK K+ KGFDLEDFR+QL QMKNMGG+ G++DKLP +  +
Sbjct: 301 LSLIEQAEQTLDKDKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPSIGGV 360

Query: 361 PADMKDKVD---DRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLL 417
                       ++ FKQMEAIINSMT  ER++PDL+ GSRK+RIA GSGTQVQD+ RL+
Sbjct: 361 NLSQMGNAQGAAEKQFKQMEAIINSMTPAERRDPDLVSGSRKRRIAMGSGTQVQDIGRLI 420

Query: 418 KQFTQMQKMMKKMQ-QGGMKGMMRNMQGLMGGGG 450
           KQ  QMQKMMKK   +GGM  MMR M G+  GGG
Sbjct: 421 KQHKQMQKMMKKFSAKGGMAKMMRGMGGMFPGGG 454