Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., signal recognition particle subunit FFH/SRP54 (srp54) from Synechococcus elongatus PCC 7942

 Score =  414 bits (1063), Expect = e-120
 Identities = 218/460 (47%), Positives = 316/460 (68%), Gaps = 7/460 (1%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MF+ L +RL +    + G+ +++E N+++ L+EVR ALLEADV L VV++F+ +V+E AV
Sbjct: 12  MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 71

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G +V   + P Q+FIK+V  +L  VMGE++  L  AA+ P VILMAGLQGAGKTT+  KL
Sbjct: 72  GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 131

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
           +  L+ ++ +  L+V+ DVYRPAAI QL TL   + V  F    D  P++IA   ++ A+
Sbjct: 132 ALHLR-KEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKAR 190

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
           ++  D +IVDTAGRL ID +MM E+  + +AI P E L VVD+M GQ+AA   ++F + +
Sbjct: 191 QEGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERI 250

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
            +TG ILTK+DGD+RGGAALS+R ++G+PIKF+G+GEK +AL+PFHP+R+ASRILGMGDV
Sbjct: 251 GITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDV 310

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360
           L+L+E  Q  +D    EK+ +K    K FD  DF +Q+  +KNMG + G +  +PG+   
Sbjct: 311 LTLVEKAQEEIDLADVEKMQEKILAAK-FDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGK 369

Query: 361 PADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKG--SRKKRIAAGSGTQVQDVNRLLK 418
             D + +  +R  K++EA+INSMT +ER++PDL+    SR+ RIA G G    ++ ++++
Sbjct: 370 INDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQ 429

Query: 419 QFTQMQKMMKKMQQGGMKGMMRNMQGLMG-GGGRGGFGGG 457
           QF QM+ MM++M QGG  GM     G+ G GGG  GFGGG
Sbjct: 430 QFQQMRTMMQQMSQGGFPGM--GGMGMPGFGGGMPGFGGG 467