Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., signal recognition particle protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  685 bits (1767), Expect = 0.0
 Identities = 354/451 (78%), Positives = 398/451 (88%), Gaps = 2/451 (0%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MFENLTDRLS+TLK ISG+GRLTEDNIKDTLREVRMALLEADVALPVVR+FVN VKE AV
Sbjct: 1   MFENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAV 60

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G +V+KSLTPGQ F+KIV+ +LE  MGE+NEALNLAAQPPAVI+MAGLQGAGKTTSV KL
Sbjct: 61  GQDVAKSLTPGQVFVKIVQSELEKAMGEANEALNLAAQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
           SK L+ R KK VLVVSADVYRPAAIKQLETLA ++ V+FFPS   QKPIDIANAAI HAK
Sbjct: 121 SKFLRTRQKKSVLVVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQKPIDIANAAISHAK 180

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
            KF DV+I+DTAGRL +DE MM EI+ALH A+ P+ETLFVVDAMTGQDAA+TAKAF +AL
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVKPIETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGV+LTKVDGDARGGAALS+RHITGKPIKF+GVGEKTDALEPFHPDR+ASRILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGDV 300

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360
           LSLIE ++R VD+EKA KLA K K    FDLEDFREQL QMKNMGGMMG+L+KLPG+ QL
Sbjct: 301 LSLIEQVERGVDKEKAMKLASKVKSGGNFDLEDFREQLQQMKNMGGMMGLLEKLPGVGQL 360

Query: 361 PADMKDKVDD-RVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQ 419
           P +   ++ D ++ +QMEAIINSMT  ERQNPD+IKGSRK+RIAAGSGTQ+QDVNRLLKQ
Sbjct: 361 PPEAMAQIQDGKMTRQMEAIINSMTPGERQNPDIIKGSRKRRIAAGSGTQIQDVNRLLKQ 420

Query: 420 FTQMQKMMKKM-QQGGMKGMMRNMQGLMGGG 449
           FTQMQKMMKKM  +GGM+ MMR M G+M GG
Sbjct: 421 FTQMQKMMKKMSSKGGMQKMMRAMGGMMPGG 451