Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., signal recognition particle-docking protein FtsY from Methanococcus maripaludis JJ

 Score =  183 bits (464), Expect = 1e-50
 Identities = 105/293 (35%), Positives = 167/293 (56%), Gaps = 8/293 (2%)

Query: 9   LSKTLKNISGKGR-LTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVGVEVSKS 67
           ++K++K + GK   LTED+I+D L E+ M L EADVA  VV   +  +K   VG+++S  
Sbjct: 78  VTKSIKKVLGKDVILTEDDIEDVLEEMEMELFEADVAFDVVEKIIESLKNQLVGLKISAK 137

Query: 68  LTPGQEFIKIVRQQLEAVMGESN-EALNL-----AAQPPAVILMAGLQGAGKTTSVGKLS 121
             P +  I  +++ ++ ++ +   +  NL     A + PAV+L  G+ G GKTTS+ KL+
Sbjct: 138 DDPEEITINALKKSIKEILSQEKIDVFNLIDEKKANEEPAVLLFVGINGTGKTTSISKLA 197

Query: 122 KLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKK 181
            +LKE+    V+  + D +R  AI+QLE    + G+             +   AI HAK 
Sbjct: 198 YILKEKGYSAVMA-AGDTFRAGAIEQLEEHGKNTGIKVIKHQKGADSAAVIYDAISHAKA 256

Query: 182 KFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDALP 241
           K  +V++ DTAGR   +  +M EI+ + +   P   +FV D++ G DA   A+ F +A+ 
Sbjct: 257 KGLNVVLADTAGRQTTNINLMDEIKKVVRVTKPDLIIFVGDSLAGNDAISQAEEFNNAIN 316

Query: 242 LTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294
           + G ILTK D DA+GGAALS+ +  GKPI F+GVG++   L+ F  D +  ++
Sbjct: 317 INGAILTKTDADAKGGAALSIAYSIGKPILFMGVGQRYSDLQEFDVDWMIKKL 369