Pairwise Alignments

Query, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  680 bits (1754), Expect = 0.0
 Identities = 350/451 (77%), Positives = 400/451 (88%), Gaps = 2/451 (0%)

Query: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60
           MFENLTDRLS+TLKNISG+GRLTE+N+K+TLREVRMALLEADVALPVVR+FVN VKE AV
Sbjct: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60

Query: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120
           G EV+KSL+PGQ FIKIV+ +LE  MGE+N+AL+LA QPPAV++MAGLQGAGKTTSV KL
Sbjct: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180
            KLL+ R KK VLVVSADVYRPAAIKQLETLA ++ V+FFPS   QKPIDIA AAI HAK
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240
            KF DV+I+DTAGRL +DE MM EI+ALH A+ P+ETLFVVDAMTGQDAA+TAKAF +AL
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGVILTKVDGDARGGAALS+RHITGKPIKF+GVGEKTDALEPFHPDRIASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300

Query: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360
           LSLIE+++R VD+EKA KLA K K+   FDLEDFREQL QMKNMGGMM M++KLPG+ QL
Sbjct: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360

Query: 361 PADMKDKVDD-RVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQ 419
           P D   ++ D ++ +QMEAIINSMT KER+NPDLIKGSRK+RIAAGSGT++QDVNRLLKQ
Sbjct: 361 PPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLKQ 420

Query: 420 FTQMQKMMKKMQ-QGGMKGMMRNMQGLMGGG 449
           FTQMQKMMKKM  +GGM+ MMR M+G+M GG
Sbjct: 421 FTQMQKMMKKMSAKGGMQKMMRGMRGMMPGG 451