Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (545), Expect = 1e-60
 Identities = 106/260 (40%), Positives = 169/260 (65%), Gaps = 1/260 (0%)

Query: 4   LIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLS 63
           L + +A   Y +++  +   L +  G   + V   A+IA++ H   L   I    GQN S
Sbjct: 3   LFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTDDGQNFS 62

Query: 64  ILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKL 123
           + NV SL+++II+   S+ +F+ ++  ++PV Y+ S ++++    +P  +ITH E +P++
Sbjct: 63  LTNVISLVNWIIAFTFSVLIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEHNPEV 122

Query: 124 LLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIILIG 183
           L H+ L+L +YS L I ALYA+QLA + +KLK K++  ++P +PPL+ VE+QL+ +++IG
Sbjct: 123 LAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLI-LSPAMPPLMTVEKQLYHLVIIG 181

Query: 184 NLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFAVA 243
            +LL+  L TGFIF+ DMFA+GK HK ILS +AW VY  +LW  Y  G R +    + + 
Sbjct: 182 VILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAYTLT 241

Query: 244 GATLLTLAYFGSRFVREIIL 263
           GATLL+LAYFG+R V+E+IL
Sbjct: 242 GATLLSLAYFGARIVKELIL 261