Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., cytochrome c assembly protein (RefSeq) from Shewanella loihica PV-4

 Score =  209 bits (533), Expect = 4e-59
 Identities = 106/261 (40%), Positives = 168/261 (64%), Gaps = 1/261 (0%)

Query: 4   LIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLS 63
           + + +A   Y +++  +V  L +  G   K V   AA+A++ H   LS  I    GQN S
Sbjct: 3   IFSASAIFFYSIALVLVVSRLFHADGPNRKAVAAFAAVAVVLHAAALSQAIFTGDGQNFS 62

Query: 64  ILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKL 123
           + NV S++++II+   ++ MF+ ++  ++PV Y+ S I+++    LP  +ITH E  P++
Sbjct: 63  LTNVISMVNWIIAFTFTILMFRLKVIVVVPVVYACSVISVALLWLLPPKYITHFELYPEV 122

Query: 124 LLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIILIG 183
           L H+ L+L +YS L I ALYA+QLA + +KLK KK   ++P +PPL+ VE+QL+ +++IG
Sbjct: 123 LAHVVLSLMAYSALMIAALYAIQLAMIQNKLK-KKQLMLSPAIPPLMTVEKQLYHLVIIG 181

Query: 184 NLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFAVA 243
            +LL+ +L TGFIF+ DMFA G+ HK ILS +AW  Y  +L   Y  G + +    + + 
Sbjct: 182 VVLLSLSLATGFIFLDDMFADGQGHKAILSIIAWFTYIAMLAQQYWVGCKIRTAVAYTLT 241

Query: 244 GATLLTLAYFGSRFVREIILR 264
           GATLL+LAYFG+R V+E+IL+
Sbjct: 242 GATLLSLAYFGARIVKELILQ 262