Pairwise Alignments

Query, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (550), Expect = 4e-61
 Identities = 108/260 (41%), Positives = 170/260 (65%), Gaps = 1/260 (0%)

Query: 4   LIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLS 63
           + + +A   Y +++  +   L +  G   K V   AAIA++ H   LS  I  + GQN S
Sbjct: 3   IFSASAMFFYCIALVLVTSRLFHPQGPNRKAVAGIAAIAVVLHAAALSQAIFTTDGQNFS 62

Query: 64  ILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKL 123
           + NV SL+++II+   ++ MF+ ++  ++PV Y+ S ++++    LP  FI H E  P++
Sbjct: 63  LTNVISLVNWIIAFTFTVMMFRLKVIVVVPVVYACSVLSVALLWLLPPKFIIHFELYPEV 122

Query: 124 LLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLFKIILIG 183
           L H+ L+L +YS L I ALYA+QLA + +KLK K++  ++P++PPL+ VE+QL+ +++IG
Sbjct: 123 LAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLM-LSPSIPPLMTVEKQLYHLVIIG 181

Query: 184 NLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVTWFAVA 243
            +LL+ +L TGFIF+ DMFA GK HK ILS +AW VY  +LW  Y  G + +    + + 
Sbjct: 182 VILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIYTLT 241

Query: 244 GATLLTLAYFGSRFVREIIL 263
           GATLL+LAYFG+R V+E+IL
Sbjct: 242 GATLLSLAYFGARIVKELIL 261