Pairwise Alignments

Query, 426 a.a., HlyC/CorC family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  125 bits (313), Expect = 3e-33
 Identities = 94/420 (22%), Positives = 202/420 (48%), Gaps = 29/420 (6%)

Query: 12  LLACLIIISAYFSGSETGMMALNRYRLKHLANSGHKGAKRVEKLLDRPDRLIGLILIGNN 71
           ++  LI  S +FS SE  + A  + RL+ LA+ G   A+RV +L   P     ++ IG N
Sbjct: 9   IILLLIGTSCFFSMSEIALAAARKIRLRQLADEGDPRAERVLQLQAHPGSFFTVVQIGLN 68

Query: 72  LVNILA-----SAIATIIGMRL--------YGDLGVAIATGALTLVILVFAEVTPKTLAA 118
            V I+      SA    I   L           L   ++   +T + ++ A++ PK  A 
Sbjct: 69  AVAIMGGIVGESAFTPYIRAGLESWVADPWLSQLSFVLSFIIVTSLFILIADLMPKRAAM 128

Query: 119 LYPERVSYASSVLLTILMKLLSPLVLFVNLMTNGLIRILGISPKHGKGDHLSSEELRTVV 178
             PERV+      +T  ++LL+PLV   N + N + R+L I     + D ++S+++  V+
Sbjct: 129 AMPERVALVLVGPMTFCIRLLTPLVWVFNGLANAIFRLLQIPT--ARNDQVTSDDIYAVM 186

Query: 179 NEA--GGLIPRRHQDMLLSILDLEHVTVNDIMIPRNEITGININDDWKSIVRQLVHSPHG 236
           +     G++ +  Q M+ ++ +++ V V   M  R  +    + DD + I R++   PH 
Sbjct: 187 DAGAEAGVLDKDEQQMIENVFEMQTVPVTAAMTARESLVYFLLQDDEEVIKRKIAEDPHT 246

Query: 237 RVVLYRDKIDEVVGILRLREASRFMLEKNDFNKEMLLRAADEIY---FIPEGTPLNVQLL 293
           + ++   ++D + G++  +E    +L +    + + L+ +  ++    IP+   L+  + 
Sbjct: 247 KFLVCDGQLDTIKGVVDAKE----LLIRVINGQSITLKDSTLVHNCLIIPDSLSLSESME 302

Query: 294 KFQRNKERIGLIVDEYGEIIGLTTLEDILEEIVGEFTTSMSPSLADEITPQGDGSFLIEG 353
            F+ ++    ++++EY  ++G+ T  D+   ++G ++   S    ++I  +   S+L++G
Sbjct: 303 YFKNHRADFAVVMNEYALVVGIVTTNDLQSAVMGAWSLHES---EEQIIARDKDSWLVDG 359

Query: 354 SANIRDINKSLKWKL--PTDGPRTLNGLILEHLEEIPASHLSVKVAQHKMEILELEENRI 411
              I D+ ++   +    +    T+ G ++  L +IP     V    +K E+++++  ++
Sbjct: 360 VTPITDVMRAFGIEAFPQSQNYETIAGFMMFMLRKIPKRTDFVNFGGYKFEVVDIDAYKV 419