Pairwise Alignments

Query, 860 a.a., alanine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., alanyl-tRNA synthetase (RefSeq) from Shewanella loihica PV-4

 Score = 1187 bits (3071), Expect = 0.0
 Identities = 589/874 (67%), Positives = 688/874 (78%), Gaps = 15/874 (1%)

Query: 1   MFMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYT 60
           M+ +T  +R AFL FF   GHQ+V+SSSLVP NDPTLLFTNAGMNQFKD FLG +KR Y+
Sbjct: 1   MYQTTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYS 60

Query: 61  RATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQ 120
           RATTAQRCVRAGGKHNDL+NVG+TARHHTFFEMLGNFSFGDYFK+DAI++AW FLT+ L+
Sbjct: 61  RATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELK 120

Query: 121 LPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGP 180
           LPKERL VTVYETDDEAF+IWNK++G+ A+ IIRIGD KG   + SDNFWQMGDTGPCGP
Sbjct: 121 LPKERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAA-YASDNFWQMGDTGPCGP 179

Query: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGI 240
           CTEIFYDHG+HIWGG PG+PEEDGDRFIEIWN VFMQ+NR ADGTM+PLPKPSVDTGMGI
Sbjct: 180 CTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGI 239

Query: 241 ERISAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSLRVVADHIRSCAFLIVDGVMP 300
           ERI+AIMQGVHSNYEID+FQ+LIK  A+ +G  DL N+SLRVVADHIRSCAFL+ DGVMP
Sbjct: 240 ERIAAIMQGVHSNYEIDIFQSLIKKTAEILGVTDLENKSLRVVADHIRSCAFLVADGVMP 299

Query: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360
           SNEGRGYVLRRIIRRAVRHGNKLGA  AFF+KLV  L EVMG A  EL   QA+VEK L+
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALK 359

Query: 361 IEEENFGRTLDRGMSILNDALDQLSGQVLDGETVFKLYDTYGFPADLTNDVARERGFSID 420
            EEE F RTL+RG+ IL++AL QL G+ LDGET FKLYDTYGFP DLT DV RER  ++D
Sbjct: 360 AEEEQFARTLERGLGILDNALSQLEGKELDGETAFKLYDTYGFPVDLTADVCRERDITVD 419

Query: 421 EAGFEQAMEEQRQRAREAGQFGTDYNSLIKSATNTEFCGYTASRGQSVVREMFVEGAEVS 480
           EAGFE AM EQR RA+ AGQF TDYN  +K    TEFCGY+   G++ V  ++V+G  V 
Sbjct: 420 EAGFEAAMAEQRSRAQAAGQFDTDYNDSLKIDAETEFCGYSDLNGEAKVIGLYVDGQAVD 479

Query: 481 TLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAIAHHGVIAQGV 540
            L+ GD+ ++VLD+TPFY ESGGQCGD G+L  +   F V+DTQK G A+ H G++  G 
Sbjct: 480 ALAEGDQGVVVLDSTPFYGESGGQCGDKGLLSAEGVEFEVKDTQKYGQAMGHIGLVKAGS 539

Query: 541 LATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSHL 600
           +A G  ++A VD+K R    LNHS THLLHAALR+VLG HV+QKGSLV  E LRFDFSH 
Sbjct: 540 IAMGQTLNAAVDKKLRHRTELNHSVTHLLHAALRQVLGTHVSQKGSLVEPERLRFDFSHF 599

Query: 601 EAMTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSMGDF 660
           EA+   E+K+VE LVN ++RRNH ++  +M+ID+AK KGAMALFGEKYD QVRV++MGDF
Sbjct: 600 EAVKREELKQVEDLVNTQIRRNHELKAEVMDIDQAKEKGAMALFGEKYDSQVRVVTMGDF 659

Query: 661 STELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQAQHD------ 714
           S ELCGG H   TGDIGLFKI SEGGIAAGIRRIEAVTG  A+ Y+  QQAQ +      
Sbjct: 660 SIELCGGTHVGRTGDIGLFKITSEGGIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLL 719

Query: 715 --------AKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGA 766
                   AK+     K K LEKE+ QLKDKLAA  SA L  + +++AGV VLV  L G 
Sbjct: 720 KGDSASVVAKLKAQLDKTKQLEKELSQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGV 779

Query: 767 DNKALRGMVDDLKNQLSSGIIMLGNVAEGKVGLIAGVTNDLTNKVKAGELVNMVALQVGG 826
           +  ALRG+ D+LK +L SGI++LG   + KV LIAGVT DLT KVKAGELV MVA QVGG
Sbjct: 780 EAGALRGLQDELKQKLQSGIVVLGIAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQVGG 839

Query: 827 KGGGRPDMAQAGGTDAHALPSALESVDAWIAERL 860
           KGGGRPDMAQAGG++   L  AL+SV  W++ERL
Sbjct: 840 KGGGRPDMAQAGGSEPEKLAGALDSVIPWLSERL 873