Pairwise Alignments

Query, 860 a.a., alanine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., alanyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1163 bits (3008), Expect = 0.0
 Identities = 584/874 (66%), Positives = 670/874 (76%), Gaps = 15/874 (1%)

Query: 1   MFMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYT 60
           M+ +T  +R AFL FF S GHQ+V+SSSLVP NDPTLLFTNAGMNQFKD FLG++KR+YT
Sbjct: 1   MYQTTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYT 60

Query: 61  RATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQ 120
           RATTAQRCVRAGGKHNDL+NVG+TARHHTFFEMLGNFSFGDYFKEDAI++ W FLT+VL 
Sbjct: 61  RATTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLM 120

Query: 121 LPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGP 180
           LPKERL VT+Y+TDDEAF+IWNKK+G+ A+ IIRIGD KG   + SDNFWQMGDTGPCGP
Sbjct: 121 LPKERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAP-YASDNFWQMGDTGPCGP 179

Query: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGI 240
           CTEIFYDHGDHIWGG PGSPEEDGDRFIEIWN VFMQ+NR A G M PLPKPSVDTGMGI
Sbjct: 180 CTEIFYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGI 239

Query: 241 ERISAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSLRVVADHIRSCAFLIVDGVMP 300
           ERI+AIMQGVHSNYEID+F+ LI  AA+ IG  DL+N+SLRV+ADHIRSCAFL+ DGVMP
Sbjct: 240 ERIAAIMQGVHSNYEIDIFRALIAKAAEIIGVADLSNKSLRVIADHIRSCAFLVADGVMP 299

Query: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360
           SNEGRGYVLRRIIRRAVRHGNKLGA  AFF+KLV  L +VMG A   L + Q +VEK L+
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALK 359

Query: 361 IEEENFGRTLDRGMSILNDALDQLSGQVLDGETVFKLYDTYGFPADLTNDVARERGFSID 420
            EEE F RTL+RG+ IL+ AL++L G  LDGETVFKLYDTYGFP DLT DV RER   +D
Sbjct: 360 AEEEQFARTLERGLGILDSALNELQGDTLDGETVFKLYDTYGFPVDLTADVCRERNIIVD 419

Query: 421 EAGFEQAMEEQRQRAREAGQFGTDYNSLIKSATNTEFCGYTASRGQSVVREMFVEGAEVS 480
           EAGFE AM EQR RA+ AG FG DYN+ +K    T FCGY+   G + V  +++ G  V 
Sbjct: 420 EAGFEAAMAEQRSRAQAAGNFGADYNAALKIDAETAFCGYSELTGNAKVTALYLNGESVP 479

Query: 481 TLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAIAHHGVIAQGV 540
            ++ GD A++VLD TPFYAESGGQ GD GVL      F V DTQK G A  H G +  G 
Sbjct: 480 AINTGDDAVVVLDVTPFYAESGGQVGDKGVLMAQGIEFTVNDTQKFGQASGHKGTLTAGS 539

Query: 541 LATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSHL 600
           L+ G  ++A VD+K R    LNHS THLLHAALR+VLG HV QKGSLV  E LRFDFSH 
Sbjct: 540 LSVGQVLEAKVDKKLRHRTQLNHSVTHLLHAALRQVLGTHVTQKGSLVDPERLRFDFSHF 599

Query: 601 EAMTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSMGDF 660
           EA+   E+K+VE LVN ++RRNH ++   M IDEAK KGAMALFGEKYD QVRV++MGDF
Sbjct: 600 EAVKPFELKQVEELVNTQIRRNHELKVAEMAIDEAKEKGAMALFGEKYDSQVRVVTMGDF 659

Query: 661 STELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEM 720
           S ELCGG H   TGDIGLFKI SEGGIAAG+RRIEAVTG  A+ Y+  QQA+ +   S +
Sbjct: 660 SIELCGGTHVGRTGDIGLFKITSEGGIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLL 719

Query: 721 AA--------------KAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGA 766
            A              K K LEKE+QQLKDKLAA  SA L      + GVNVL+ +L G 
Sbjct: 720 KADAHSVVTKLKVQLDKMKQLEKEMQQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGV 779

Query: 767 DNKALRGMVDDLKNQLSSGIIMLGNVAEGKVGLIAGVTNDLTNKVKAGELVNMVALQVGG 826
           +  ALRG+ D+LK +L S II+LG   EGKV LIAGV+NDL  K+KAGELV MVA QVGG
Sbjct: 780 EAGALRGLQDELKQKLKSAIIVLGVAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQVGG 839

Query: 827 KGGGRPDMAQAGGTDAHALPSALESVDAWIAERL 860
           KGGGRPDMAQAGG+    L +AL  V  WI ERL
Sbjct: 840 KGGGRPDMAQAGGSQPENLDAALSQVLPWITERL 873