Pairwise Alignments

Query, 860 a.a., alanine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 872 a.a., alanyl-tRNA synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  628 bits (1619), Expect = 0.0
 Identities = 387/895 (43%), Positives = 538/895 (60%), Gaps = 75/895 (8%)

Query: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62
           ++  E+R +F +FFESKGH IV S+ +V  +DPTL+FTNAGMNQFKD  LG     Y R 
Sbjct: 2   LTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHRV 61

Query: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122
             +Q+C+R  GKHNDLE VG    HHT FEMLGN+SFGDYFK++AI +AWE+L +VL+L 
Sbjct: 62  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKLN 121

Query: 123 KERLLVTVYE--------TDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGD 174
            E L  TV+E         DDEA   W +   +P D II  G+K        DNFW+MGD
Sbjct: 122 PEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIIN-GNK-------HDNFWEMGD 171

Query: 175 TGPCGPCTEIFYD---HGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPK 231
           TGPCGPC+EI  D     +            D  + IEIWN VFMQ+NR ADG++EPLP 
Sbjct: 172 TGPCGPCSEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPA 231

Query: 232 PSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG-------YQDLTNQSLRVVA 284
             +DTGMG ER+   +QG  SNY+ DVFQ ++KA A   G        QD+   ++RV+A
Sbjct: 232 KVIDTGMGFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDI---AMRVIA 288

Query: 285 DHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHG-NKLGAQGAFFHKLVGPLAEVMGT 343
           DHIR+ AF I DG +PSN   GYV+RRI+RRAVR+G   LG + +F +KL+  L + MG 
Sbjct: 289 DHIRTIAFSITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGD 348

Query: 344 AGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDAL--DQLSGQV-LDGETVFKLYDT 400
           A  EL  Q+ L+EKV++ EEE F RTL+ G+ +L+  +   + +G+  + G+  F LYDT
Sbjct: 349 AYPELIAQKGLIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDT 408

Query: 401 YGFPADLTNDVARERGFSIDEAGFEQAMEEQRQRAREAGQFGTDYNSLIKSATNTEFCGY 460
           +GFP DLT  + RE G +++   F   M++Q+QRAR A    T     ++  T TEF GY
Sbjct: 409 FGFPLDLTELILRENGMTVNIEEFNAEMQQQKQRARNAAAIETGDWVTLREGT-TEFVGY 467

Query: 461 TASRGQ-SVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFH 519
             +  + S++R   ++    +         IVLD TPFYAESGGQ GDTGVL ++     
Sbjct: 468 DYTEYEASILRYRQIKQKNQTLYQ------IVLDCTPFYAESGGQVGDTGVLVSEFETIE 521

Query: 520 VEDTQKLGNAIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGE 579
           V DT+K  N   H  +  +        + A VD  +RAA + NHSATHLL +ALR+VLGE
Sbjct: 522 VIDTKKENNLPIH--ITKKLPEHPEAPMMACVDTDKRAACAANHSATHLLDSALREVLGE 579

Query: 580 HVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSI-ETNIMNIDEAKAK 638
           H+ QKGSLV  ++LRFDFSH + +T  EI++VE LVN ++R N  + E   + I+EAK  
Sbjct: 580 HIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKIRANIPLKEYRNIPIEEAKEL 639

Query: 639 GAMALFGEKYDDQVRVLSMGDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVT 698
           GA+ALFGEKY ++VRV+  G  S E CGGIH + TG+IG+ KIISE  +AAG+RRIEA T
Sbjct: 640 GAIALFGEKYGERVRVIQFGS-SIEFCGGIHVAATGNIGMVKIISESSVAAGVRRIEAYT 698

Query: 699 GEGALDYLDAQQAQHDAKVSEM-----------AAKAKLLEKEI---QQLKDKLAAKESA 744
           G    + LD  Q      +SE+            A  K +E+     +Q++D +  KE++
Sbjct: 699 GARVEEMLDTIQ----DTISELKSLFNNAPDLGIAIRKYIEENAGLKKQVEDYMKEKEAS 754

Query: 745 ---GLINQVKQIAGVNVL--VAQLNGADNKALRGMVDDLKNQLSSGIIML-GNVAEGKVG 798
               L+  +++I G+ V+   A L     + ++ +   L+ +++  +  + G++  GK  
Sbjct: 755 LKERLLKNIQEIHGIKVIKFCAPLPA---EVVKNIAFQLRGEITENLFFVAGSLDNGKPM 811

Query: 799 LIAGVTNDL-TNKVKAGELVNMVALQVGGKGGGRPDMAQAGGTDAHALPSALESV 852
           L   ++++L    +KAG LV   A  + G GGG+P  A AGG +   L +A+E V
Sbjct: 812 LTVMLSDNLVAGGLKAGNLVKEAAKLIQGGGGGQPHFATAGGKNTDGLNAAIEKV 866