Pairwise Alignments

Query, 354 a.a., DNA recombination/repair protein RecA from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., recombinase RecA from Rhodopseudomonas palustris CGA009

 Score =  455 bits (1171), Expect = e-133
 Identities = 226/335 (67%), Positives = 280/335 (83%), Gaps = 7/335 (2%)

Query: 4   NKQKALAAALGQIEKQFGKGSIMRLGDN-RAMDVETISTGSLSLDIALGAGGLPMGRIVE 62
           +K KAL+AAL QIE+QFGKGS+MRLG N R+MD+ETIS+GSL LDIALG GGLP GRIVE
Sbjct: 16  DKSKALSAALSQIERQFGKGSVMRLGKNDRSMDIETISSGSLGLDIALGVGGLPKGRIVE 75

Query: 63  IFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGE 122
           I+GPESSGKTTL L  +A AQ++G  CAF+DAEHALDPVYA+KLGVN+D+LL+SQPD GE
Sbjct: 76  IYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDHGE 135

Query: 123 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 182
           QALEI D L RSGA+DV++VDSVAAL P+AE+EGEMGD+  GLQAR++SQA+RKLT ++ 
Sbjct: 136 QALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTASIN 195

Query: 183 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 242
           +SN M IFINQIRMKIGVM+G+PETTTGGNALKFYASVRLDIRR G IKE +EVVGN+TR
Sbjct: 196 KSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQTR 255

Query: 243 IKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKA 302
           +KVVKNK+A PFK+    IMYG+G ++ GE++DLGVK  +VEKSGAW+S++  ++GQG+ 
Sbjct: 256 VKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQGRE 315

Query: 303 NACKYLKENPEIAKTLDKKLREMLLNPENMQLIAE 337
           NA  +LK NP++   ++  +R      +N  LIAE
Sbjct: 316 NAKAFLKANPDMTAKIEAAIR------QNSGLIAE 344