Pairwise Alignments

Query, 354 a.a., DNA recombination/repair protein RecA from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., recombinase A (RefSeq) from Shewanella loihica PV-4

 Score =  554 bits (1428), Expect = e-162
 Identities = 277/346 (80%), Positives = 314/346 (90%), Gaps = 2/346 (0%)

Query: 1   MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRI 60
           +D NK+KAL+A LGQIEKQFGKGSIM+LG+NR+MDVETISTGSLSLD+ALGAGGLP+GRI
Sbjct: 3   IDANKEKALSAVLGQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDVALGAGGLPLGRI 62

Query: 61  VEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDT 120
           VEI+GPESSGKTTLTLE+IAAAQREGK CAFIDAEHALDP+YA+KLGV+ID LL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDT 122

Query: 121 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 180
           GEQALEICDAL RSGAVDVI+VDSVAALTPKAEIEGE+GDSHMGL ARM+SQAMRKL GN
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 181 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE 240
           LKQSN + IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK+ EEV+GNE
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNE 242

Query: 241 TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQG 300
           TR+KVVKNKIAAPFK+A  QI+YG+G NR GEL+DLGV HK++EKSGAWYSY GDKIGQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVMHKLIEKSGAWYSYKGDKIGQG 302

Query: 301 KANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 346
           +ANA KYL ENPEI   +D+ LR MLL     Q +A++++  ++V+
Sbjct: 303 RANAGKYLVENPEIGAEIDQALRAMLLG--GGQAVAQSATGDENVD 346