Pairwise Alignments

Query, 354 a.a., DNA recombination/repair protein RecA from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., recA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  564 bits (1454), Expect = e-165
 Identities = 284/346 (82%), Positives = 316/346 (91%), Gaps = 2/346 (0%)

Query: 1   MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRI 60
           +D NK+KALAA L QIEKQFGKGSIM+LG++R+MDVETISTGSLSLD+ALGAGGLPMGRI
Sbjct: 3   VDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRI 62

Query: 61  VEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDT 120
           VEI+GPESSGKTTLTLE+IAAAQREGKTCAFIDAEHALDP+YAKKLGV+ID LL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 121 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 180
           GEQALEICDAL RSGAVDVI+VDSVAALTPKAEIEGE+GDSHMGL ARM+SQAMRKL GN
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 181 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE 240
           LKQSN + IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG+EVVGNE
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 241 TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQG 300
           TR+KVVKNK+AAPFK+A  QI+YGQG NR GEL+DLGV HK++EK+GAWYSY GDKIGQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 301 KANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 346
           +ANA KYL ENP IA  +DK LRE+LL+  N   +A ++S  D+VE
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRELLLS--NPSALASSASDDDNVE 346