Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens FW300-N2E2

 Score =  955 bits (2468), Expect = 0.0
 Identities = 508/852 (59%), Positives = 620/852 (72%), Gaps = 7/852 (0%)

Query: 12  LSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPI 71
           LS HTPMMQQY RLK ++PD L+FYRMGDFYE+FY+DAK+A++LLDI+LT RG SAG  I
Sbjct: 8   LSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMAI 67

Query: 72  PMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLS 131
           PM G+P+HA EGYLAKLV++GESV ICEQ+GDPATSKGPVER+VVRI+TPGTV+DEALL 
Sbjct: 68  PMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLD 127

Query: 132 ERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFSP 191
           ER DNLIAA+      FG A +DITSG F + E +  E + AEL+R +P ELL P+D+  
Sbjct: 128 ERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLIPDDWPK 187

Query: 192 VHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVKD 251
                 R+G RRR  W+FE D+A + L QQF T+DL GFG E   L + AAGCL+ Y K+
Sbjct: 188 DLPAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLAYAKE 247

Query: 252 TQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSRM 311
           TQRTALPH+RSL  +R D +V+LD A+RRNLEL  NLAGG DNTL  V+D C T MGSR+
Sbjct: 248 TQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRL 307

Query: 312 LKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSARPRD 371
           L RW+++P+RD   L  R  +IT L +   + +L P LK+IGDIERILAR+ LR+ARPRD
Sbjct: 308 LTRWLNRPLRDLTVLLARQSSITCLLDRYRFEQLQPQLKEIGDIERILARIGLRNARPRD 367

Query: 372 LARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRDGGV 431
           LARLR A+  LPEL   M+ L+ PHL +L        EL  LLE+AI +NPP VIRDGGV
Sbjct: 368 LARLRDALGALPELQVAMTGLEAPHLQQLARTTSTYPELAALLEKAIIDNPPAVIRDGGV 427

Query: 432 IADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSHL 491
           +  GY AELDE + L+  A +FL  LEA E+ R G+  LKVGYN +HG++I++   Q+  
Sbjct: 428 LKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYFIELPSKQAEQ 487

Query: 492 VPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQ 551
            P  YVRRQTLK AER+I  ELK  EDK L++KSRALA EK L+E L + L+  L  LQ 
Sbjct: 488 APADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLPPLQD 547

Query: 552 LAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPIELN 611
            A ++A+LDVL NLAERA NL+   P  V E  + I  GRHPVVE+V+  PF+AN + L+
Sbjct: 548 TAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRHPVVEQVLTTPFVANDLSLD 607

Query: 612 PQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLA 671
              RML+ITGPNMGGKSTYMRQTALI L+AHIGS+VPA S  +  +DRIFTRIG+SDDLA
Sbjct: 608 DNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLA 667

Query: 672 SGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTL 731
            GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAWA+AE LA  + A TL
Sbjct: 668 GGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLA-HLRAYTL 726

Query: 732 FATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGVPKP 791
           FATHYFELT LP   P +ANVHL+A EH + I F+H V  G AS+SYGLAVA LAGVP  
Sbjct: 727 FATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSE 786

Query: 792 VIKNARAKLQQLELLS---SQPAETR-KPSRVDIANQLSLIPEPSAVEQALAGVDPDQLT 847
           VI  AR  L +LE  S     P  T+ KP+    ++  + +P P  V   LA +D D LT
Sbjct: 787 VITRAREHLSRLETTSLPHEAPRPTKGKPTAPQQSDLFASLPHP--VLDELAKLDLDDLT 844

Query: 848 PRQALDMLYQLK 859
           PR+ALD+LY LK
Sbjct: 845 PRRALDLLYTLK 856