Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella amazonensis SB2B

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 561/862 (65%), Positives = 674/862 (78%), Gaps = 13/862 (1%)

Query: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64
           N++    L  HTPMM+QYL +KA +PD+LLFYRMGDFYELFYDDAKRASE+L ISLT RG
Sbjct: 2   NSTDLLDLEKHTPMMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARG 61

Query: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124
            S G+PIPMAG+P+HAVEGYLAKLVQ+G+SVAICEQIGDPAT+KGPVERKVVR+VTPGT+
Sbjct: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQLGQSVAICEQIGDPATAKGPVERKVVRVVTPGTL 121

Query: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184
           TDEALL ER DNL+AA+Y     +G+AT+D+ SGRF ++E  + E + AELQRTSP ELL
Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGYGFATLDVASGRFVIAELPSREALEAELQRTSPAELL 181

Query: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244
           + EDF  + L+   +G RRRP WEF+ DT  + L +QFGTRDL GFG+  A+L L AAGC
Sbjct: 182 YSEDFGDMGLINHIRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIADARLSLQAAGC 241

Query: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304
           L+QYVKDTQRTALPHI S+    Q  S+ILDAATRRNLELT +L+G  +NTLA VLD+  
Sbjct: 242 LMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRENTLASVLDNTV 301

Query: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364
           T MGSRML+RWIHQP+R + T+  R  A+ EL ET LY +L   LK +GDIERILARLAL
Sbjct: 302 TAMGSRMLQRWIHQPLRCHDTIRGRQQAVQELLETGLYEDLRAELKALGDIERILARLAL 361

Query: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424
           RSARPRD ARLR A+  LP +   +      HL  L        E  +LL RAI +NPPV
Sbjct: 362 RSARPRDFARLRDALGILPLIRERLQRCDARHLKSLNILLGDFPEEYELLCRAIVDNPPV 421

Query: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484
           +IRDGGVI +GY +ELDEWR L++G  ++LE++E  E++R GI TLKVG+N VHG+YI+V
Sbjct: 422 LIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATLKVGFNRVHGYYIEV 481

Query: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544
           SR QS LVP  Y RRQTLKN ERYI  ELK++E+KVL+S+ +ALALEKQLWEELFDL++P
Sbjct: 482 SRAQSALVPIAYQRRQTLKNTERYITPELKEYEEKVLSSQGKALALEKQLWEELFDLILP 541

Query: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604
            L++LQ  A + ++LDVL N A+RA+   Y  P L    GI I+ GRHPVVERV   PFI
Sbjct: 542 KLQELQDFALAASELDVLANFADRADLFNYHCPELSDTTGILIEAGRHPVVERVSQSPFI 601

Query: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664
            NP+EL+  RRMLI+TGPNMGGKSTYMRQ ALI LMAHIGS+VPAE A IGP+DRIFTRI
Sbjct: 602 PNPVELSNHRRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAERALIGPVDRIFTRI 661

Query: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724
           GASDDLASGRSTFMVEMTETANILHNAT NSLVLMDEIGRGTSTYDG+SLAW++AE+LA+
Sbjct: 662 GASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTSTYDGMSLAWSAAEYLAQ 721

Query: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784
           ++GAMTLFATHYFELT+LP +LP + NVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 722 KLGAMTLFATHYFELTQLPEMLPGVHNVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAA 781

Query: 785 LAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQ----LSLIPEPSAVEQALAG 840
           LAGVP  VIK A+ KL QLE          +   VD++ Q    L++ PEPSA E  L  
Sbjct: 782 LAGVPANVIKAAKHKLLQLE---------SRDHGVDMSKQQALPLTMTPEPSAAELRLEA 832

Query: 841 VDPDQLTPRQALDMLYQLKKLL 862
           +DP+ L+PRQAL++L++LK+LL
Sbjct: 833 IDPNDLSPRQALELLFELKRLL 854