Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 573/858 (66%), Positives = 681/858 (79%), Gaps = 6/858 (0%)

Query: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64
           NA  ++ L  HTPMM+QYL LKAE PD+LLFYRMGDFYELFYDDAKRASELL ISLT RG
Sbjct: 2   NAVDTQYLEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARG 61

Query: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124
            S G+PIPMAG+P+HAVEGYLAKLVQ+  SVAICEQIGDPAT+KGPVERK+VRIVTPGT+
Sbjct: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGPVERKIVRIVTPGTL 121

Query: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184
           TDEALL ER DNL+AA+YH    FGYAT+D++SGRF ++E  ++E + AELQRT+P ELL
Sbjct: 122 TDEALLQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELL 181

Query: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244
           + EDFS   L+AS  G RRRP WEF+ DT+ + L +QFGT+DL GFG+ + +L L AAGC
Sbjct: 182 YSEDFSEPALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQAAGC 241

Query: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304
           LIQYVKDTQRTALPHI ++T   Q  S++LDAATR+NLELT NL GG+DNTLA VLD+ A
Sbjct: 242 LIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLDNTA 301

Query: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364
           TPMGSRML+RWIH+P+R++  +  R DAI EL +   +  LH  LK +GDIERI ARLA+
Sbjct: 302 TPMGSRMLQRWIHEPLRNHNIIRARHDAIDELLDNGYHESLHEQLKALGDIERITARLAI 361

Query: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424
           RSARPRD ARLR A+  LPE+   +++   PHL  L +H     E   LL RAI +NPP+
Sbjct: 362 RSARPRDFARLRQALALLPEIQQQLADCNSPHLKALSSHLGDFPEEHALLSRAIVDNPPM 421

Query: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484
           +IRDGGVI +GY  ELDEWR L+ GAT++L  LEA E+   G  TLKVGYN VHG+YI+V
Sbjct: 422 LIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVHGYYIEV 481

Query: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544
           SR +S LVP  Y RRQTLKN ERYI+ ELK+HE+KVL+S+ +ALALEKQLWEELFDLLMP
Sbjct: 482 SRRESDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEELFDLLMP 541

Query: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604
            L +LQ  A + A+LDV+ N AERAE L+Y RP L  ++GIHI+ GRHPVVERV   PFI
Sbjct: 542 RLHELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAGRHPVVERVSQTPFI 601

Query: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664
           ANP+ LNP RRMLI+TGPNMGGKSTYMRQ ALI LMAHIGS+VPA+ A+IGP+DRIFTRI
Sbjct: 602 ANPVSLNPARRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAQKAAIGPVDRIFTRI 661

Query: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724
           GA+DDLASGRSTFMVEMTETANILHNAT  SLVLMDEIGRGTSTYDGLSLAW++AE LA+
Sbjct: 662 GAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTSTYDGLSLAWSAAEHLAQ 721

Query: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784
            + +MTLFATHYFELT+LP+ + ++ANVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 722 NLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAA 781

Query: 785 LAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSL-IPEPSAVEQALAGVDP 843
           LAGVP  V++ A+ KL  LE   S+  E   P       QLS+ +PE S     L  +DP
Sbjct: 782 LAGVPAKVVQAAKHKLHHLE---SRDREEELPELRQA--QLSMTMPETSKALDRLDTIDP 836

Query: 844 DQLTPRQALDMLYQLKKL 861
           D LTPRQALD+LY+LK+L
Sbjct: 837 DSLTPRQALDLLYELKQL 854