Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., DNA mismatch repair protein MutS (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1117 bits (2890), Expect = 0.0
 Identities = 568/859 (66%), Positives = 685/859 (79%), Gaps = 7/859 (0%)

Query: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64
           N   ++ L  HTPMM+QYL +KAE+ D+LLFYRMGDFYELFYDDAKRASELL ISLT RG
Sbjct: 2   NPIDTDDLEKHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARG 61

Query: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124
            S G+PIPMAG+P+HAVEGYLAKLVQ+G+SVAICEQIGDPATSKGPVERKVVRIVTPGT+
Sbjct: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGTL 121

Query: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184
           TDEALL ER DNL+AA+Y     FGYAT+D++SGRF ++E +T+E + AELQRT+P E+L
Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181

Query: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244
           + EDF  + L+   +G RRRP WEF+ DT+ + L  QFGT+DL GFG+  A+L L AAGC
Sbjct: 182 YSEDFGALDLLHHFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGC 241

Query: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304
           L+QYVKDTQRTALPHI ++T   Q  +++LDAATRRNLELT NL+GG DNTLA VLD+ A
Sbjct: 242 LMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTA 301

Query: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364
           T MGSRML+RWIHQP+RD+A +  R  A+ EL ETA++  LH  LK +GDIERI+ARLAL
Sbjct: 302 TAMGSRMLQRWIHQPLRDHALILARQTAVNELLETAVHESLHEQLKALGDIERIMARLAL 361

Query: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424
           R+ARPRD ARLR A+  LP+L   +S+L  PH  +L        +   LLE AI +NPP+
Sbjct: 362 RTARPRDFARLRQALSLLPQLQLSLSQLSAPHTVKLGQLLGEFPQEQQLLEHAIVDNPPM 421

Query: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484
           +IRDGGVI +GY+AELDEWR L+ GA+++L +LEA E++R GI TLKVGYN VHG+YI+V
Sbjct: 422 LIRDGGVIREGYNAELDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHGYYIEV 481

Query: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544
           SR QS+ VP +Y RRQTLKN ERYI  ELK++E+KVL+S+ +ALALEKQLW+ELFDL++P
Sbjct: 482 SRLQSNQVPLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILP 541

Query: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604
            L +LQ  A + A+LDVL N AERAE L Y  P L  E G+ I+ GRHPVVERV   PFI
Sbjct: 542 KLHELQDFARAAAELDVLSNFAERAETLGYTSPELSSEIGVKIEAGRHPVVERVSQTPFI 601

Query: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664
           ANP+ L+ QRRMLI+TGPNMGGKSTYMRQ ALI LMAHIG +VPAE A+IGP+DRIFTRI
Sbjct: 602 ANPVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRI 661

Query: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724
           GASDDLASGRSTFMVEMTETANILHNAT  SLVLMDEIGRGTSTYDGLSLAW++AE+LA+
Sbjct: 662 GASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQ 721

Query: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784
           ++GAMTLFATHYFELT+LP ++  + NVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 722 QVGAMTLFATHYFELTQLPELMSGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAA 781

Query: 785 LAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSLIPEP--SAVEQALAGVD 842
           LAGVP  VIK A+ KL QLE    Q   T+ P +  +A     +PEP  +     L  ++
Sbjct: 782 LAGVPARVIKAAKHKLHQLESRDHQVEGTKTPIQTLLA-----LPEPVENPAVSKLKAIN 836

Query: 843 PDQLTPRQALDMLYQLKKL 861
           PD LTP+QALD+LY+LK+L
Sbjct: 837 PDNLTPKQALDLLYELKRL 855