Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 894 a.a., DNA mismatch repair protein MutS from Paraburkholderia bryophila 376MFSha3.1

 Score =  827 bits (2135), Expect = 0.0
 Identities = 464/888 (52%), Positives = 584/888 (65%), Gaps = 30/888 (3%)

Query: 2   MKSNASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLT 61
           M +  + +  ++ HTPMMQQYLR+KAE+P  L+FYRMGDFYELF++DA++A+ LLD++LT
Sbjct: 1   MGTQTAAASDVAQHTPMMQQYLRIKAEHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLT 60

Query: 62  KRGASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTP 121
           +RGASAG PI MAGVP HAVE YLAKLV++GESVAICEQIGDPATSKGPVERKVVR+VTP
Sbjct: 61  QRGASAGNPIKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPATSKGPVERKVVRVVTP 120

Query: 122 GTVTDEALLSERVDN-LIAAIYHHNGR-----FGYATMDITSGRFQLSEPQTEEEMAAEL 175
           GT+TD ALLS++ D  L+A    HN R      G A +++ SG  +L+E    +++AA L
Sbjct: 121 GTLTDAALLSDKSDVFLLAMCVAHNRRGVATGVGLAWLNLASGALRLAEV-APDQVAAAL 179

Query: 176 QRTSPRELLFPEDFSPVHLMASRQGNR---RRPIWEFELDTAKQQLNQQFGTRDLVGFGV 232
           +R  P E+L  +  +         G R   R P W F++ +  Q+L  Q     L GFG 
Sbjct: 180 ERIGPAEILVADTAADSASWTPPTGARALTRVPAWHFDVASGTQRLCDQLEVAGLDGFGA 239

Query: 233 EQAKLGLCAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGT 292
                   AAG L+ Y   TQ   L H+RSL  + + + + LD ATRRNLE+T  L G  
Sbjct: 240 HSLTCACGAAGALLLYAAATQGQQLRHVRSLKVEYESEYIGLDPATRRNLEITQTLRGTE 299

Query: 293 DNTLAEVLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITELKET---ALYGELHPVL 349
             TL  +LD C T MGSR+L+ W+H P RD      R  AI  L E    A    L   L
Sbjct: 300 SPTLCSLLDTCCTTMGSRLLRHWLHHPPRDPLVAQSRQQAIGALLEAPAGADVDSLRSAL 359

Query: 350 KQIGDIERILARLALRSARPRDLARLRHAMQQLPELHSVMSELKQ--PHLTELRTHAEPM 407
           + I DIERI  RLAL  ARPRDL+ LR     LPEL + ++ +      L  +    EP 
Sbjct: 360 RHISDIERITGRLALFCARPRDLSSLRDTFAALPELRAKVAAVSSNADSLARIDASLEPP 419

Query: 408 DELCDLLERAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGI 467
               +LL RAI   P  ++RDGGVIA GY AELDE RD++    +FL  LE  ER R GI
Sbjct: 420 QACVELLTRAIAPEPAAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGI 479

Query: 468 DTLKVGYNNVHGFYIQVSRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRA 527
             L+V YN VHGFYI+V+RGQ+  VP  Y RRQTLKNAERYI  ELK  EDK L+++ RA
Sbjct: 480 GNLRVEYNKVHGFYIEVTRGQTDKVPDDYRRRQTLKNAERYITPELKTFEDKALSAQERA 539

Query: 528 LALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHI 587
           LA E+ L++ L   L+P +   Q++A+++A+LD+L   AERA  L++  P+    AGI I
Sbjct: 540 LARERSLYDALLQTLLPFIPDCQRVASALAELDLLTAFAERARALDWVAPSFSPNAGIEI 599

Query: 588 QGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYV 647
           + GRHPVVE  + E FIAN   L P+R++L+ITGPNMGGKST+MRQTALIAL+A++GSYV
Sbjct: 600 EQGRHPVVEAQV-EQFIANDCTLTPERKLLLITGPNMGGKSTFMRQTALIALLAYVGSYV 658

Query: 648 PAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTS 707
           PA  A+ GP+DRIFTRIGA+DDLA GRSTFMVEMTE A IL++AT  SLVLMDEIGRGTS
Sbjct: 659 PARRAAFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTS 718

Query: 708 TYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMH 767
           T+DGL+LAWA A  L    G  TLFATHYFELT+LP   P  ANVHL AVEHG GI F+H
Sbjct: 719 TFDGLALAWAIARHLLSHNGCHTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLH 778

Query: 768 AVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLS-SQPA------ETRKPSRVD 820
           AV EG A++SYGL VA LAGVP  VI+ AR  L  LE  S +QP           P  ++
Sbjct: 779 AVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLAHLEQQSAAQPTPQLDLFAAPLPMLLE 838

Query: 821 IANQ-------LSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLKKL 861
            A+         S  P  +A+ + L G+DP+ L PR+ALD+LY+L +L
Sbjct: 839 DADDERAGSEAPSQSPAMTALVERLRGIDPNDLRPREALDLLYELHEL 886