Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  592 bits (1527), Expect = e-173
 Identities = 341/866 (39%), Positives = 522/866 (60%), Gaps = 28/866 (3%)

Query: 18  MMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAGVP 77
           MM+Q+L LKA++PD ++ +R GDFYE +  DA  ASE+L I+LTKR    G+ I MAG P
Sbjct: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60

Query: 78  FHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEALLSERVDNL 137
            HA++ YL KL++ G+ VAIC+Q+ DP  +K  V+R +  +VTPG   ++ +L+ + +N 
Sbjct: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120

Query: 138 IAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPEDFSPVHLMAS 197
           +AA++      G A +DI++G F  +E   +  +   L    P+E+LF        LM  
Sbjct: 121 LAAVHFGKASCGVAFLDISTGEFLTAEGPFDY-VDKLLNNFGPKEILFERG---KRLMF- 175

Query: 198 RQGNRRRPIWEFELD-------TAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQYVK 250
            +GN     + FELD       TA+++L + F T++L GFGVE  K G+ A+G ++QY+ 
Sbjct: 176 -EGNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLT 234

Query: 251 DTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSR 310
            TQ T + HI SL    +D+ V LD  T R+LEL  ++  G  ++L  V+D   +PMG+R
Sbjct: 235 MTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISPMGAR 293

Query: 311 MLKRWIHQPMRDNATLNQRLDAITELKETALYGEL-HPVLKQIGDIERILARLALRSARP 369
           +LKRW+  P++D   +N RL+ +        + EL    L  IGD+ERI++++A+    P
Sbjct: 294 LLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSP 353

Query: 370 RDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRDG 429
           R++ +L+ A+Q +  +     E     L  +         + D + + I  +PP++I  G
Sbjct: 354 REVVQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKG 413

Query: 430 GVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQS 489
           GVI DG + ELDE R ++    ++L +++  E ++ GI +LKV YNNV G+YI+V     
Sbjct: 414 GVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHK 473

Query: 490 HLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQL 549
             VP  ++R+QTL NAERYI +ELK +E+K+L ++ + L LE QL+ +L   L   + Q+
Sbjct: 474 DKVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQI 533

Query: 550 QQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVM--NEPFIANP 607
           Q  A  +A+LD L + A  A    Y RP +     + I+ GRHPV+E+ +   E +IAN 
Sbjct: 534 QINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIAND 593

Query: 608 IEL-NPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGA 666
           + L +  ++++IITGPNM GKS  +RQTALI L+A IGS+VPAESA IG +D+IFTR+GA
Sbjct: 594 VMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGA 653

Query: 667 SDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK-- 724
           SD+++ G STFMVEM E A+IL+N +  SLVL DE+GRGTSTYDG+S+AWA  E++ +  
Sbjct: 654 SDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHP 713

Query: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784
           +  A TLFATHY EL E+      + N ++   E  + + F+  ++ G +  S+G+ VA 
Sbjct: 714 KAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAK 773

Query: 785 LAGVPKPVIKNARAKLQQLELLSSQPAETRKP----SRVDIANQLSLI----PEPSAVEQ 836
           +AG+PK ++K A   L+QLE  + Q   + KP    S      QLS      P    +  
Sbjct: 774 MAGMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQLSFFQLDDPILCQIRD 833

Query: 837 ALAGVDPDQLTPRQALDMLYQLKKLL 862
            +  +D + LTP +AL+ L  +KK++
Sbjct: 834 EILNLDVNNLTPIEALNKLNDIKKIV 859