Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 569/860 (66%), Positives = 681/860 (79%), Gaps = 4/860 (0%)

Query: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64
           N   ++ L  HTPMM+QYL +KAE+ D+LLFYRMGDFYELFYDDAKRASELL ISLT RG
Sbjct: 2   NPIDTDDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARG 61

Query: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124
            S G+PIPMAG+P+HAVEGYLAKLVQ+G+SVAICEQIGDPATSKGPVERKVVRIVTPGT+
Sbjct: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGTL 121

Query: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184
           TDEALL ER DNL+AA+Y     FGYAT+D++SGRF ++E +T+E + AELQRT+P E+L
Sbjct: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181

Query: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244
           + EDF  + L+   +G RRRP WEF+ DT+ + L  QFGT+DL GFG+  A+L L AAGC
Sbjct: 182 YSEDFGAMELLHHFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGC 241

Query: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304
           L+QYVKDTQRTALPHI ++T   Q  +++LDAATRRNLELT NL+GG DNTLA VLD+ A
Sbjct: 242 LMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTA 301

Query: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364
           T MGSRML+RWIHQP+RD+A +  R  A+ EL ET  +  LH  LK +GDIERI+ARLAL
Sbjct: 302 TAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLETTAHESLHDQLKALGDIERIMARLAL 361

Query: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424
           R+ARPRD ARLR A+  LP+L   +++L  PH  +L        E   LLERAI +NPP+
Sbjct: 362 RTARPRDFARLRQALNLLPQLQQSLAQLSAPHTVKLGQLLGEFPEEQQLLERAIVDNPPM 421

Query: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484
           +IRDGGVI +GY+AELDEWR L+ GAT++L +LEA E++R GI TLKVGYN VHG+YI+V
Sbjct: 422 LIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYIEV 481

Query: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544
           SR QS  VP +Y RRQTLKN ERYI  ELK++E+KVL+S+ +ALALEKQLW+ELFDL++P
Sbjct: 482 SRLQSQQVPLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILP 541

Query: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604
            L +LQ  A + A+LDVL N AERAE L Y  P L  E G+ I+ GRHPVVERV   PFI
Sbjct: 542 KLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVERVSQTPFI 601

Query: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664
           ANP+ L+ QRRMLI+TGPNMGGKSTYMRQ ALI LMAHIG +VPA+ A IGP+DRIFTRI
Sbjct: 602 ANPVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPADRAIIGPIDRIFTRI 661

Query: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724
           GASDDLASGRSTFMVEMTETANILHNAT  SLVLMDEIGRGTSTYDGLSLAW++AE+LA+
Sbjct: 662 GASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQ 721

Query: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784
           ++GAMTLFATHYFELT+LP ++  + NVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 722 QVGAMTLFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAA 781

Query: 785 LAGVPKPVIKNARAKLQQLELLSSQ-PAETRKPSRVDIANQLSLIPEP--SAVEQALAGV 841
           LAGVP  VIK A+ KL QLE    Q        +R  I   L+L PEP  +     L  +
Sbjct: 782 LAGVPARVIKAAKHKLHQLESRDHQVEGANVNGTRAPIQTLLAL-PEPVENPAVSKLKDI 840

Query: 842 DPDQLTPRQALDMLYQLKKL 861
           +PD LTP+QALD+LY+LK+L
Sbjct: 841 NPDNLTPKQALDLLYELKRL 860