Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens FW300-N2E2

 Score =  213 bits (543), Expect = 8e-60
 Identities = 101/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+   ++ P D +
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 496

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + DS    P      + ++E+    L  L  +
Sbjct: 497 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAR 556

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 557 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 16  EDEALEVLETDAELTSDEELVAVEGASE-DVREEFDASAKSLDATQMYLSEIGFSPLLTA 74
           + +AL + + D +  + EE  A   A E D+        ++ D  +MY+ E+G   LLT 
Sbjct: 63  DKDALMLADADTDEAAAEEAAAALAAVETDI-------GRTTDPVRMYMREMGTVELLTR 115

Query: 75  EEEVLYARRALRG 87
           E E+  A+R   G
Sbjct: 116 EGEIEIAKRIEEG 128