Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N2E2

 Score =  406 bits (1043), Expect = e-118
 Identities = 217/330 (65%), Positives = 253/330 (76%), Gaps = 10/330 (3%)

Query: 9   KVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAK---------SLDAT 59
           +V EFD +DE L ++ET   + S          S   + +  AS K         +LDAT
Sbjct: 6   EVPEFDIDDEVL-LMETGIAMDSMSNDEGATPPSVRAKSKHSASLKQHKYIDYTRALDAT 64

Query: 60  QMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLD 119
           Q+YL+EIGFSPLL+ EEEV +AR +  GD A RKRMIESNLRLVVKI+RRY NRGL+LLD
Sbjct: 65  QLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLD 124

Query: 120 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIY 179
           LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+Y
Sbjct: 125 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVY 184

Query: 180 LRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDIL 239
           LR AREL+Q+LDHEP+PEEIA  L++PV +V +ML LNER+SSVD  +G D DK LLD L
Sbjct: 185 LRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTL 244

Query: 240 PDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLT 299
            D    DP    QDDD+ +S+  WL EL  KQ+EV+ RRFGL G+E STLE+VG EI LT
Sbjct: 245 TDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLT 304

Query: 300 RERVRQIQVEGLRRLREILVKQGLNMEALF 329
           RERVRQIQVEGL+RLREIL K GL+ E+LF
Sbjct: 305 RERVRQIQVEGLKRLREILEKNGLSSESLF 334