Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  213 bits (543), Expect = 8e-60
 Identities = 101/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 379 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 438

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+   ++ P D +
Sbjct: 439 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 498

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + DS    P      + ++E+    L  L  +
Sbjct: 499 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVATVESLKEATREVLSGLTAR 558

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 559 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 603



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 18  EALEVLETDAELTSDEELVAVEGASE-DVREEFDASAKSLDATQMYLSEIGFSPLLTAEE 76
           +AL + E D +  + EE  A   A E D+        ++ D  +MY+ E+G   LLT E 
Sbjct: 65  DALLLAEADTDEAAAEEAAAALAAVETDI-------GRTTDPVRMYMREMGTVELLTREG 117

Query: 77  EVLYARRALRG 87
           E+  A+R   G
Sbjct: 118 EIEIAKRIEEG 128