Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Pseudomonas stutzeri RCH2

 Score =  400 bits (1029), Expect = e-116
 Identities = 213/323 (65%), Positives = 252/323 (78%), Gaps = 6/323 (1%)

Query: 12  EFDFEDEALEVLETDAELTSDEELV--AVEG---ASEDVREEFDASAKSLDATQMYLSEI 66
           EFD +D  L ++ET   L     +   A  G   A+   + +F    ++LDATQ+YL+EI
Sbjct: 9   EFDVDDAVL-LMETPIHLDQKSNVTRAATAGRPKAASSKQHKFIDYNRALDATQLYLNEI 67

Query: 67  GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL 126
           GFSPLLT EEEV +AR A +GD A RKRMIESNLRLVVKI+RRY NRGL+LLDL+EEGNL
Sbjct: 68  GFSPLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLVEEGNL 127

Query: 127 GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL 186
           GLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLR AREL
Sbjct: 128 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAAREL 187

Query: 187 SQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNAD 246
           +Q+LDHEP+PEEIA  L++PV +V +ML LNER++SVD  +G D DK LLD L D    D
Sbjct: 188 TQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVTSVDVSLGPDTDKTLLDTLTDDRPTD 247

Query: 247 PEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQI 306
           P     DDD+  S+  WL +L+ KQ+EV+ RRFGL G+E STLEEVG+EI LTRERVRQI
Sbjct: 248 PCELLLDDDLSNSIDQWLSDLSEKQREVVIRRFGLRGHEASTLEEVGQEIGLTRERVRQI 307

Query: 307 QVEGLRRLREILVKQGLNMEALF 329
           QVE LRRLREIL + GL+ +ALF
Sbjct: 308 QVEALRRLREILERNGLSSDALF 330