Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Xanthomonas campestris pv. campestris strain 8004

 Score =  220 bits (560), Expect = 8e-62
 Identities = 108/243 (44%), Positives = 171/243 (70%), Gaps = 4/243 (1%)

Query: 77  EVLYARRALRGDEA----ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAV 132
           E+    RA+   EA    A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV
Sbjct: 367 EIKDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 426

Query: 133 EKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDH 192
           +KF+  RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q+   
Sbjct: 427 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGR 486

Query: 193 EPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQ 252
           E TPEE+A E+D P D + K++++ +   S++TPIG D D  L D + D++   P  +T 
Sbjct: 487 EATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTT 546

Query: 253 DDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLR 312
           + ++ E++ + L  L P++ +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR
Sbjct: 547 NINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 606

Query: 313 RLR 315
           +LR
Sbjct: 607 KLR 609



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 54  KSLDATQMYLSEIGFSPLLTAEEEVLYARRALRG 87
           ++ D  +MY+ E+G   LLT E E+  A+R   G
Sbjct: 101 RTTDPVRMYMREMGTVELLTREGEIAIAKRIEEG 134