Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase, sigma 70 subunit, RpoD from Pseudomonas syringae pv. syringae B728a

 Score =  213 bits (543), Expect = 8e-60
 Identities = 101/225 (44%), Positives = 157/225 (69%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EPTPEE+   ++ P D +
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 497

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + DS    P      + ++E+    L  L  +
Sbjct: 498 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAR 557

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 558 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 10  VEEFDFEDEALEVLETDAELTSDEELVAVEGASE-DVREEFDASAKSLDATQMYLSEIGF 68
           V E   + +AL + + D +  + EE  A   A E D+        ++ D  +MY+ E+G 
Sbjct: 57  VHESAPDADALMLADADTDEAAAEEAAAALAAVETDI-------GRTTDPVRMYMREMGT 109

Query: 69  SPLLTAEEEVLYARRALRG 87
             LLT E E+  A+R   G
Sbjct: 110 VELLTREGEIEIAKRIEEG 128