Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase, sigma 38 subunit, RpoS from Pseudomonas syringae pv. syringae B728a

 Score =  403 bits (1036), Expect = e-117
 Identities = 214/327 (65%), Positives = 257/327 (78%), Gaps = 10/327 (3%)

Query: 12  EFDFEDEALEVLETDA---ELTSDEELVAVEGASEDV------REEFDASAKSLDATQMY 62
           EFD +DE L ++E      E +++++  AV G ++        + ++    ++LDATQ+Y
Sbjct: 9   EFDIDDEVL-LMEAGIVLKEASNEKQPAAVSGRTKVKHSTSLKQHKYIDYTRALDATQLY 67

Query: 63  LSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIE 122
           L+EIGFSPLL+ EEEV +AR +  GD A RKRMIESNLRLVVKI+RRY NRGL+LLDLIE
Sbjct: 68  LNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIE 127

Query: 123 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRT 182
           EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLR 
Sbjct: 128 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRA 187

Query: 183 ARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDS 242
           AREL+Q+LDHEP+PEEIA  L++PV +V +ML LNER+SSVD  +G D DK LLD L D 
Sbjct: 188 ARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDD 247

Query: 243 HNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRER 302
              DP    QDDD+ +S+  WL EL  KQ+EV+ RRFGL G+E STLE+VG EI LTRER
Sbjct: 248 RPTDPCELLQDDDLSQSIDQWLSELTEKQREVVIRRFGLRGHESSTLEDVGLEIGLTRER 307

Query: 303 VRQIQVEGLRRLREILVKQGLNMEALF 329
           VRQIQVEGL+RLREIL K GL+ E+LF
Sbjct: 308 VRQIQVEGLKRLREILEKNGLSSESLF 334