Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., RNA polymerase sigma factor RpoD from Synechocystis sp000284455 PCC 6803

 Score =  212 bits (539), Expect = 2e-59
 Identities = 108/234 (46%), Positives = 163/234 (69%), Gaps = 1/234 (0%)

Query: 82  RRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGF 141
           RR L  D  A+ +M++SNLRLVV I+++Y NRGL+  DLI+EG+LGLIRA EKFD E+G+
Sbjct: 180 RRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 239

Query: 142 RFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIAL 201
           +FSTYATWWIRQ I RA+ +Q+RTIRLP+H+ + ++   +T + LSQ +  +PT EEIA 
Sbjct: 240 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAE 299

Query: 202 ELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLL 261
           +++  ++ +  + +  +   S++TPIG + D  L D + ++    PE     + +RE L 
Sbjct: 300 KMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLE 358

Query: 262 NWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           N LD L+P++++VL  R+GL      TLEE+G+  N+TRER+RQI+ + LR+LR
Sbjct: 359 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 14  DFEDEALEVLETDAELTSDEELVAVEGASEDVRE-EFDASAK---SLDATQMYLSEIGFS 69
           D +D+ ++V + +      +E+ A EG  + VR+   DA  K   + D+ ++YL EIG  
Sbjct: 30  DIDDDDIDVEDLE------QEVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRI 83

Query: 70  PLLTAEEEVLYARRALRGDEAARKRMIESNLRL 102
            LL AEEE+  AR+     +     +I  NL L
Sbjct: 84  RLLRAEEEIELARQIA---DLLELELIRDNLTL 113