Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., RNA polymerase sigma factor SigC from Synechocystis sp000284455 PCC 6803

 Score =  199 bits (505), Expect = 1e-55
 Identities = 107/229 (46%), Positives = 154/229 (67%), Gaps = 9/229 (3%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+  MI++NLRLVV ++++Y NRGL LLDLI+EG LGL RAVEKFDP +G+RFSTY+ WW
Sbjct: 165 AKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWW 224

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I RA+  Q+R IRLP+H+ ++LN   R  R++SQ   H P  +E+A EL    + V
Sbjct: 225 IRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQV 284

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDE---- 266
            ++L    R  S++  +G D D  L+D+L ++    PE    D+ +RE+L N + E    
Sbjct: 285 REVLTQVPRSVSLELKVGQDKDTELMDLL-ETDTQSPE----DELMREALQNDMQEILLD 339

Query: 267 LNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           L P+++EV+A RFG       +L E+GR +NL+RERVRQI+ + L++LR
Sbjct: 340 LTPREQEVIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKALQKLR 388



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 20/86 (23%)

Query: 18  EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEE 77
           EA+  LE + +LT+D + +     +   R++F     S D  ++YL +IG  PLL  +EE
Sbjct: 18  EAMLPLEEE-DLTADSQDLEYTAVAH--RQQF-----STDLVRLYLQDIGRIPLLKRDEE 69

Query: 78  VLYARRALRGDEAARKRMIESNLRLV 103
           V  A++            ++S LRLV
Sbjct: 70  VHIAQQ------------VQSYLRLV 83