Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., RNA polymerase sigma factor, RpoD/SigA family from Synechocystis sp000284455 PCC 6803

 Score =  205 bits (522), Expect = 1e-57
 Identities = 117/299 (39%), Positives = 172/299 (57%), Gaps = 41/299 (13%)

Query: 57  DATQMYLSEIGFSPLLTAEEEVLYAR---------------------------------- 82
           D  + YL EIG  PLLT E+E++  +                                  
Sbjct: 35  DMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADL 94

Query: 83  ------RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFD 136
                 R L   E A+++MIE+NLRLVV I+++Y  R +  LDLI+EG+LGL R VEKFD
Sbjct: 95  SVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 154

Query: 137 PERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTP 196
           P +G++FSTYA WWIRQ I RA+  Q RTIRLPIH+ ++LN   +T RELSQ+L    TP
Sbjct: 155 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 214

Query: 197 EEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDI 256
            E+A  L+     + + L L+ +  S+D  +G + D  L ++L D   +   + TQ + +
Sbjct: 215 AEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGVSPDAYITQ-ESM 273

Query: 257 RESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           R+ L N L EL P+Q+ VL  RFGL   +  +L ++G+ +N++RERVRQ++ + L +L+
Sbjct: 274 RQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332