Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., RNA polymerase sigma factor, RpoD/SigA family from Synechocystis sp000284455 PCC 6803

 Score =  206 bits (523), Expect = 1e-57
 Identities = 124/310 (40%), Positives = 180/310 (58%), Gaps = 8/310 (2%)

Query: 15  FEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTA 74
           F++ A   L + AE       + +  ++EDVR++     +   + Q +   + F P +  
Sbjct: 63  FKEMARYPLLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEF-PQVRQ 121

Query: 75  EEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEK 134
            E  LY  RA      A++RMI SNLRLVV I++RY NRG+  LDLI+EG +GL RA EK
Sbjct: 122 FEIWLYQLRA------AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEK 175

Query: 135 FDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEP 194
           FDP++G++FSTYA WWIRQ I R + N  RTIRLPIHVV++LN   +  R L Q L   P
Sbjct: 176 FDPDKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNP 235

Query: 195 TPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDD 254
              E+A  LD     + ++L+L  +  S++  +G   D  L+D+L D     PE    + 
Sbjct: 236 NEGELAAALDITPAQLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDQQLQLPEDLMNES 295

Query: 255 DIRESLLNWLDE-LNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRR 313
            +R  ++  L E L  ++ EV+  R+G+  ++  TLEEVG   NL+RERVRQIQ + +R+
Sbjct: 296 MLRREIVEVLAEVLTEREMEVICLRYGIASHQSYTLEEVGNMFNLSRERVRQIQSKAMRK 355

Query: 314 LREILVKQGL 323
           LR   V + L
Sbjct: 356 LRRPQVARRL 365