Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., RNA polymerase sigma factor, RpoD/SigA family from Synechocystis sp000284455 PCC 6803

 Score =  199 bits (506), Expect = 8e-56
 Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 42/303 (13%)

Query: 55  SLDATQMYLSEIGFSPLLTAEEEVLYAR-------------------------------- 82
           S D+ + YL EIG  PLLT EEE++YA+                                
Sbjct: 6   SPDSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKA 65

Query: 83  ---------RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVE 133
                    +A++  E A+++M+E+NLRLVV ++++Y  R L LLDLI+EG +G+ R VE
Sbjct: 66  ADLSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVE 125

Query: 134 KFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHE 193
           KFDP +G+RFSTYA WWIRQ I RA+  ++RTIRLPIH+ ++LN   +  R+LSQ     
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRA 185

Query: 194 PTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQD 253
            +  E+A  L+     V + L  +    S+D  +G + D  L D+L D      +F+T  
Sbjct: 186 ASIAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLLEDDGPLPEDFATY- 244

Query: 254 DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRR 313
             ++  L + + EL P+Q+EVL  RFGL   +P TL  +G  ++++RERVRQI+ E L +
Sbjct: 245 ASLQLDLDSLMAELTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNK 304

Query: 314 LRE 316
           LR+
Sbjct: 305 LRK 307