Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RNA polymerase sigma factor SigC from Synechococcus elongatus PCC 7942

 Score =  192 bits (488), Expect = 1e-53
 Identities = 113/278 (40%), Positives = 170/278 (61%), Gaps = 13/278 (4%)

Query: 46  REEFDASAKSLD--------ATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIE 97
           R  F+A AK +D        A Q+ L        L  EE     ++  +  + A+  MI+
Sbjct: 110 RPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEE----LKQVCKEGQRAKDHMIK 165

Query: 98  SNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 157
           +NLRLVV ++++Y NRGL LLDL++EG LGL RAVEKFDP +G+RFSTYA WWIRQ I R
Sbjct: 166 ANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITR 225

Query: 158 ALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLN 217
           A+  Q+RTIRLP+HV ++LN   +  R+++Q        EEIA EL+   D V ++L   
Sbjct: 226 AIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQVREVLLRV 285

Query: 218 ERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLAR 277
            +  S++T +G + D  L D+L ++ +  PE     + +   L   L ELN ++++V+  
Sbjct: 286 PKSISLETRVGKEKDTELGDLL-ETTDFTPEERLTQESLSNDLQRLLLELNHRERDVIRM 344

Query: 278 RFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           RFGL   +  +L E+G+ ++L+RERVRQI+ + L++LR
Sbjct: 345 RFGLRDGQIYSLAEIGQVLDLSRERVRQIEAKALQKLR 382



 Score = 30.4 bits (67), Expect = 8e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 25 TDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
          T+ E  S +     E  S +  E   +S +S D  ++YL +IG   LL  +EEV  AR
Sbjct: 10 TEYEAVSSDVANLSETPSSEAVETAVSSRQSTDLIRLYLQDIGRVRLLGRDEEVSEAR 67