Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., group2 RNA polymerase sigma factor SigB from Synechococcus elongatus PCC 7942

 Score =  206 bits (525), Expect = 5e-58
 Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 41/301 (13%)

Query: 55  SLDATQMYLSEIGFSPLLTAEEEVLYAR-------------------------------- 82
           S D  + YL EIG   LLTAEEE+ + R                                
Sbjct: 9   SPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAV 68

Query: 83  --------RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEK 134
                   R +   + A+++MIE+NLRLVV I+++Y  R +  LDLI+EG LGL R VEK
Sbjct: 69  DLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEK 128

Query: 135 FDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEP 194
           FDP +G++FSTYA WWIRQ I RA+  Q+RTIRLPIH+ ++LN   +T RELSQ+L    
Sbjct: 129 FDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSA 188

Query: 195 TPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDD 254
           T  E+A  L+ P++ V + +++N +  S+D  +G   D  L ++L D  ++  ++  + +
Sbjct: 189 TASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSPSDY-VEQE 247

Query: 255 DIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRL 314
            +R  L N + EL P+Q+ V+A R+GL   +  +L +VG  +N++RERVR+++ + +  L
Sbjct: 248 SLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL 307

Query: 315 R 315
           R
Sbjct: 308 R 308