Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., principal RNA polymerase sigma factor SigA from Synechococcus elongatus PCC 7942

 Score =  219 bits (557), Expect = 9e-62
 Identities = 118/301 (39%), Positives = 186/301 (61%), Gaps = 24/301 (7%)

Query: 41  ASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARR----------------- 83
           AS        A  ++ D    YLS IG  PLLTA++E+   ++                 
Sbjct: 2   ASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTF 61

Query: 84  ------ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDP 137
                 A++  + A++RMI++NLRLVV ++++Y  +GL  LDLI+EG LGL RAVEKFDP
Sbjct: 62  TEAETAAIQLGQRAKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDP 121

Query: 138 ERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPE 197
            +G++FSTYA WWIRQ++ RA+  Q+RTIRLP+H+ + L+   +  REL+  L   P+ +
Sbjct: 122 SKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQ 181

Query: 198 EIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALL-DILPDSHNADPEFSTQDDDI 256
           EIA  +  P++D+  +LR + + +S+D P+ G+  K+ L +++ D +  +P    ++   
Sbjct: 182 EIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAMQ 241

Query: 257 RESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRE 316
           RE L  WL+ L P++++VL  RFGL   E  TL E+GR + ++RERVRQ++V+ LR+LR 
Sbjct: 242 REQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRN 301

Query: 317 I 317
           +
Sbjct: 302 L 302