Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., RNA polymerase sigma factor SigD from Synechococcus elongatus PCC 7942

 Score =  190 bits (482), Expect = 5e-53
 Identities = 115/301 (38%), Positives = 163/301 (54%), Gaps = 42/301 (13%)

Query: 57  DATQMYLSEIGFSPLLTAEEEVLYARRALR---------------GD------------- 88
           D  + YL EIG  PLLT EEEV+  +R  +               GD             
Sbjct: 10  DLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAG 69

Query: 89  -------------EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKF 135
                        E A+++MIE+NLRLVV ++++Y  R + LLDLI+EG +G+ R VEKF
Sbjct: 70  LSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKF 129

Query: 136 DPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPT 195
           DP +G+RFSTYA WWIRQ I RA+  + RTIRLPIH+ ++LN   +  R+LSQ+L    T
Sbjct: 130 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTAT 189

Query: 196 PEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDD 255
             E+A  LD     V   L       S+D  +G + D  L D+L        EF+ Q   
Sbjct: 190 LPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLLETDCTTPEEFTLQ-AS 248

Query: 256 IRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           +R  +   LD+L  +Q++V+A R+GL   +  TL  +G  + ++RERVRQ++ E L  LR
Sbjct: 249 MRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLR 308

Query: 316 E 316
           +
Sbjct: 309 Q 309