Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score =  211 bits (537), Expect = 2e-59
 Identities = 129/358 (36%), Positives = 200/358 (55%), Gaps = 53/358 (14%)

Query: 8   TKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSL---------DA 58
           TK +    +     V+E    +    ++ A++   + V E+ DA+AK+          D+
Sbjct: 32  TKAKRSSRKKATTAVVEPATTIAPTADVDAIDD-EDSVGEDEDAAAKAKAKVRKTYTEDS 90

Query: 59  TQMYLSEIGFSPLLTAEEEVLYAR------------------------------------ 82
            ++YL EIG   LL A+EE+  AR                                    
Sbjct: 91  IRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPL 150

Query: 83  -----RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDP 137
                R  RG   A+ +M++SNLRLVV I+++Y NRGL+  DLI+EG+LGLIRA EKFD 
Sbjct: 151 DEFRRRLFRG-RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 209

Query: 138 ERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPE 197
           E+G++FSTYATWWIRQ I RA+ +Q+RTIRLP+H+ + ++   +T + LSQ +  +PT E
Sbjct: 210 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEE 269

Query: 198 EIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIR 257
           EIA  ++  ++ +  + +  +   S++TPIG + D  L D + ++    PE     + +R
Sbjct: 270 EIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLR 328

Query: 258 ESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           E L   L  L+P++++VL  R+GL      TLEE+G+  N+TRER+RQI+ + LR+LR
Sbjct: 329 EDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386