Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score =  216 bits (550), Expect = 6e-61
 Identities = 122/293 (41%), Positives = 179/293 (61%), Gaps = 23/293 (7%)

Query: 57  DATQMYLSEIGFSPLLTAEEEVLYARRA---------------------LRGDEAARKRM 95
           D    YLS IG  PLLTAEEEV  +R+                      L+  + A+ +M
Sbjct: 19  DHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKM 78

Query: 96  IESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 155
           +++NLRLVV ++++Y N+GL LLDLI+EG+LGL RAVEKFDP  G++FSTYA WWIRQ++
Sbjct: 79  LKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSM 138

Query: 156 ERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLR 215
            RA+ N  RTIRLPIHV ++++   +  REL+ +L   P+  EIA  L  P+ DV  +L 
Sbjct: 139 TRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLS 198

Query: 216 LNERISSVDTPIGGDGDKALL-DILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEV 274
            +   +S+D    GD  ++ L D++PD  + +P  +       E +  WL  L  ++++V
Sbjct: 199 QSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLTEREQQV 258

Query: 275 LARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA 327
           L  RFGL   E  TL E+GR +N++RER+RQ++   L++LR +L +Q L  EA
Sbjct: 259 LQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR-VLSQQPLCPEA 310