Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  218 bits (555), Expect = 4e-61
 Identities = 112/280 (40%), Positives = 179/280 (63%), Gaps = 1/280 (0%)

Query: 36  VAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRM 95
           +A +G  E  R E           Q   +E G S +      V   ++  R    A+K M
Sbjct: 392 LAGKGWKEFARAENQTIRDIRQEIQNLATETGIS-IAEFRRIVSMVQKGEREARIAKKEM 450

Query: 96  IESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 155
           +E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I
Sbjct: 451 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 510

Query: 156 ERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLR 215
            R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V K+L+
Sbjct: 511 TRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLK 570

Query: 216 LNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVL 275
           + +   S++TP+G + D  L D + D +   P  +    ++RE+    L  L P+++ VL
Sbjct: 571 IAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVL 630

Query: 276 ARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
             RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 631 RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 16  EDEALEVLETDAELTSDE------ELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFS 69
           ++EA E   +D +  +DE      EL    G +    ++ + + ++ D  +MYL E+G  
Sbjct: 80  DEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKKKEPTDRTDDPVRMYLREMGSV 139

Query: 70  PLLTAEEEVLYARRALRGDEAARKRMIESNLRL-VVKISRRYSNRGLALL 118
            LL+ E E+  A+R   G E     + ES L    + I R   N G  LL
Sbjct: 140 ELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGQTLL 189