Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  138 bits (348), Expect = 2e-37
 Identities = 95/281 (33%), Positives = 151/281 (53%), Gaps = 13/281 (4%)

Query: 62  YLSEIGFSPLLTAEEEVLYARRALRGDEA-ARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL EI   P+L  +EE + A+R    D+  A  +++ S+LRLV KI+  Y   GL + ++
Sbjct: 19  YLDEIRKFPMLEPQEEYMLAKRYQEHDDRKAAHKLVTSHLRLVAKIAMGYRGYGLPIGEV 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV-VKELNIY 179
           I EGN+GL++AV+KF+P+RGFR +TYA WWI+  I+  ++     +++      K L   
Sbjct: 79  ISEGNVGLMQAVKKFEPDRGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQKRLFFN 138

Query: 180 LRTARELSQRLDH-EPTPE---EIALELDRPVDDVTKMLRLNERISSVDTPI-GGDGDKA 234
           LR  +   Q LD  +  PE   EIA  L    ++V  M R     +S++ PI   +GD  
Sbjct: 139 LRRLKGRIQALDEGDLKPEQVKEIATTLKVSEEEVVSMNRRLSGDASLNAPIKASEGDSG 198

Query: 235 -LLDILPDSHNADPEFSTQDDDI---RESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290
              D L D H+   +   + D++   R  L N +  LN +++ +   R   L  EP TLE
Sbjct: 199 QWQDWLVDDHDNQEQILIEQDELESRRALLANAMKVLNDRERRIFEAR--RLTEEPITLE 256

Query: 291 EVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFNV 331
           ++  E +++RERVRQI+V    +++E + K  L   +   V
Sbjct: 257 DLSTEFDISRERVRQIEVRAFEKVQEAVRKAALERASALRV 297