Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RNA polymerase sigma-38 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  441 bits (1135), Expect = e-129
 Identities = 226/326 (69%), Positives = 270/326 (82%), Gaps = 5/326 (1%)

Query: 4   SNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYL 63
           +NT+   +  DF  +     E D +   D E V++    E  ++  D   ++LDATQ+YL
Sbjct: 5   NNTLVAEKLVDFSGK-----EADTDTNMDGEEVSLVQDLELEQQVQDDLQRNLDATQLYL 59

Query: 64  SEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEE 123
           SEIGFSPLLTAEEEV Y+R+ALRG E +R RMIESNLRLVVKI+RRY+NRGLALLDLIEE
Sbjct: 60  SEIGFSPLLTAEEEVYYSRKALRGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEE 119

Query: 124 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTA 183
           GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA+MNQTRTIRLPIHVVKELN+YLRTA
Sbjct: 120 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTA 179

Query: 184 RELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSH 243
           REL+ +LDHEPT EEIA +L+ P  +V++ML+LNE+I+SVD P+GGD DKALLD+LPD  
Sbjct: 180 RELAHKLDHEPTAEEIAAKLNLPSVEVSRMLKLNEKITSVDVPLGGDNDKALLDVLPDDD 239

Query: 244 NADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERV 303
           +  P++  QD+DI  S++NWL+ELN KQ+EVLARRFGLLGYEPSTLE+VG EI LTRERV
Sbjct: 240 SVGPDYKVQDEDISNSVVNWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERV 299

Query: 304 RQIQVEGLRRLREILVKQGLNMEALF 329
           RQIQVE L+RLR+IL  QGL++EALF
Sbjct: 300 RQIQVEALKRLRDILSAQGLSVEALF 325