Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  210 bits (534), Expect = 9e-59
 Identities = 100/225 (44%), Positives = 158/225 (70%)

Query: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 382 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 441

Query: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210
           IRQ I R++ +Q RTIR+P+H+++ +N   R +R++ Q +  EP+PEE+A  +  P D +
Sbjct: 442 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMAMPEDKI 501

Query: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270
            K+L++ +   S++TPIG D D  L D + D+    P  S   + ++++    L  L  +
Sbjct: 502 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQATHEVLAGLTAR 561

Query: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
           + +VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 562 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 606



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 31  SDEELVAVEGASEDVREEFDAS--------AKSLDATQMYLSEIGFSPLLTAEEEVLYAR 82
           +DE +++ +   ED  EE  A+         ++ D  +MY+ E+G   LLT E E++ A+
Sbjct: 65  ADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 83  RALRGDEAARKRMIE--SNLRLVVKISRRYSNRGLALLDLI 121
           R   G    +  + E    + ++++   ++    + L D+I
Sbjct: 125 RIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDII 165